References

General

• Wilson, Edward O. Consilience: The Unity of Knowledge. New York: Knopf, 1998.
• John F. Gratz et al.. The Expanding Digital Universe. IDC White Paper, 2007.
• NSF. Science and Engineering Indicators, 2008.

Science Map History

• Garfield, E. “Citation indexes for science: A new dimension in documentation through association of ideas.” Science 122 (1955): 108-111.
• Garfield, E., I. H. Sher, and R. J. Torpie. 1964. The Use of Citation Data in Writing the History of Science. Report of research for Air Force Office of Scientific Research under contract AF49(638)-1256. Philadelphia: The Institute for Scientific Information.
• Small, H. G. "Co-citation in the scientific literature: A new measure of the relationship between two documents." Journal of the American Society for Information Science 24 no. 4 (1973): 265-269.

Maps of Biomedical Entities

• Goh, Kwang-Il, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, and Albert-László Barabási. “The Human Disease Network.” PNAS 104 no. 21 (2007, May 22): 8685-8690.
• Yildriim, Muhammed A., Kwan-II Goh, Michael E. Cusick, Albert-László Barabási, and Marc Vidal. “Drug-target Network.” Nature Biotechnology 25 no. 10 (2007): 1119-1126.
• Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, van den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M. A map of the interactome network of the metazoan C. elegans. Science 2004, 303:540-3.
• Walhout AJ, Sordella R, Lu X, Hartley JL, Temple GF , Brasch MA, Thierry-Mieg N, Vidal M. Protein interaction mapping in C. elegans using proteins involved in vulval development. Science 2000;287:116-22.
• Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE*, Roth FP*, Vidal M*. Towards a proteome-scale map of the human protein-protein interaction network. Nature, 2005;437:1173-8 (* = co-corresponding authors).
• Han JD, Bertin N, Hao T, Goldberg DS, Berriz GF, Zhang LV, Dupuy D, Walhout AJ, Cusick ME, Roth FP, Vidal M. Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 2004;430:88-93.
• Huang NN, Mootz DE, Walhout AJ, Vidal M, Hunter CP. MEX-3 interacting proteins link cell polarity to asymmetric gene expression in Caenorhabditis elegans. Development 2002;129:747-59.
• Curehunter Inc. “Cure Hunter: Medical Search and Discovery.” http://www.curehunter.com/public/showTopPage.do

Science Maps

• Börner, Katy, Chaomei Chen, Kevin W. Boyack. “Visualizing Knowledge Domains.” In Annual Review of Information Science & Technology (ARIST) 37, edited by Blaise Cronin, 179-255. Medford, NJ: Information Today, Inc./American Society for Information Science and Technology, 2003.
• Shiffrin, Richard M. and Katy Börner. “Introduction: Mapping Knowledge Domains.” In PNAS 101 (Suppl. 1), edited by Richard M. Shiffrin and Katy Börner, 5183-5185. 2004.
• Boyack, Kevin W., Richard Klavans, and Katy Börner. “Mapping the Backbone of Science.” Scientometrics 64 no. 3 (2005): 351-374.
• Klavans, Richard and Kevin W. Boyack. “Identifying a Better Measure of Relatedness for Mapping Science.” Journal of the American Society for Information Science and Technology 57 no. 2 (2006): 251-263.
• Chen, Chaomei. Mapping Scientific Frontiers. London: Springer-Verlag, 2002.
  

Books on Data Graphics

• Bertin, Jaques. Graphics and Graphic Information-Processing. Berlin: Walter de Gruyter, 1981.
• Tufte, Edward. The Visual Display of Quantitative Information. Cheshire, CT: Graphics Press, 1983.
• Tufte, Edward R. Visual Explanations: Images and Quantities, Evidence and Narrative. Cheshire, CT: Graphics Press, 1997.
• Tufte, Edward R. Envisioning Information. Cheshire, CT: Graphics Press, 1990.

Relevant Web Pages

Biomedical Data Collection Efforts the Wiki Way

• Knewco Inc. “WikiProteins.” WikiProfessional.org. http://www.wikiprofessional.info (accessed January 1, 2008).
• Wikimedia Foundation. “Wiki Species.” http://species.wikimedia.org/wiki/Main_Page (accessed January 1, 2008).

Scholarly Data Collection Efforts

• Office of Science and Technical Information. “WorldWideScience: The Global Science Gateway.” http://worldwidescience.org (accessed January 1, 2008).
• Los Alamos National Laboratory. “Library Without Walls Project.” http://library.lanl.gov/lww (accessed January 1, 2008).
• Cyberinfrastructure for Network Science Center. “Scholarly Database.” Indiana University. https://sdb.slis.indiana.edu (accessed January 1, 2008).

Maps of Science

• Burns, Gully APC., Bruce W. Herr II, David Newman, Tommy Ingulfsen, Patrick Pantel, and Padhraic Smyth. “Interactive Google Map of Neuroscience and Poster.” http://scimaps.org/maps/neurovis (accessed January 1, 2008).
• SciTech Strategies. “Maps of Science.” http://mapofscience.com (accessed October 30, 2007).
• Indiana University School of Library and Information Science Information Visualization Laboratory. Places & Spaces: Mapping Science. http://scimaps.org/ (accessed October 30, 2007).

Maps of Biomedical Entities

• John D. and Catherine T. MacArthur Foundation and the Alfred P. Sloan Foundation. “Encyclopedia of Life (EOL).” http://www.eol.org/ (accessed January 1, 2008).

Last Modified January 15th, 2008 | Graphic Design by Elisha Hardy